IL_6SPF_004

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

6SPF|1|A|U|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.1161

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6SPF|1|A|G|81
6SPF|1|A|G|82
6SPF|1|A|G|83
6SPF|1|A|A|84
6SPF|1|A|G|85
*
6SPF|1|A|C|98
6SPF|1|A|U|99
6SPF|1|A|U|100
6SPF|1|A|U|101
6SPF|1|A|G|102
6SPF|1|A|A|103
6SPF|1|A|U|104
6SPF|1|A|C|105

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

Ribosomal protein uL29