IL_6SPF_016

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6SPF|1|A|G|791, 6SPF|1|A|G|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0918

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|G|664
6SPF|1|A|A|665
6SPF|1|A|A|666
6SPF|1|A|A|667
6SPF|1|A|C|668
*
6SPF|1|A|G|789
6SPF|1|A|A|790
6SPF|1|A|G|791
6SPF|1|A|A|792
6SPF|1|A|U|793
6SPF|1|A|A|794
6SPF|1|A|G|795
6SPF|1|A|C|796

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15