IL_6SPF_036

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6SPF|1|A|U|1023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_036 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.104

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6SPF|1|A|G|1021
6SPF|1|A|A|1022
6SPF|1|A|U|1023
6SPF|1|A|G|1024
*
6SPF|1|A|C|1111
6SPF|1|A|G|1112
6SPF|1|A|C|1113

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16