IL_6SPF_040

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6SPF|1|A|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_040 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1464

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6SPF|1|A|C|1195
6SPF|1|A|U|1196
6SPF|1|A|G|1197
6SPF|1|A|U|1198
6SPF|1|A|G|1199
6SPF|1|A|A|1200
6SPF|1|A|A|1201
6SPF|1|A|G|1202
*
6SPF|1|A|U|1221
6SPF|1|A|G|1222
6SPF|1|A|G|1223
6SPF|1|A|A|1224
6SPF|1|A|G|1225

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20