IL_6SPF_043

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GCAAC*GAC

Length

8 nucleotides

Bulged bases

6SPF|1|A|A|1319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_043 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0922

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6SPF|1|A|G|1306
6SPF|1|A|C|1307
6SPF|1|A|A|1308
6SPF|1|A|A|1309
6SPF|1|A|C|1310
*
6SPF|1|A|G|1318
6SPF|1|A|A|1319
6SPF|1|A|C|1320

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22