IL_6SPF_044
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_044 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.0631
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SPF|1|A|C|1338
6SPF|1|A|U|1339
6SPF|1|A|A|1340
6SPF|1|A|A|1341
6SPF|1|A|G|1342
*
6SPF|1|A|C|1363
6SPF|1|A|G|1364
6SPF|1|A|A|1365
6SPF|1|A|U|1366
6SPF|1|A|G|1367
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: