IL_6SPF_048

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

6SPF|1|A|U|1549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_048 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2773

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6SPF|1|A|G|1419
6SPF|1|A|A|1420
6SPF|1|A|A|1421
6SPF|1|A|G|1422
*
6SPF|1|A|C|1547
6SPF|1|A|A|1548
6SPF|1|A|U|1549
6SPF|1|A|G|1550
6SPF|1|A|C|1551

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains