IL_6SPF_086

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6SPF|1|A|G|2563, 6SPF|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_086 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SPF|1|A|C|2497
6SPF|1|A|U|2498
6SPF|1|A|C|2499
*
6SPF|1|A|G|2561
6SPF|1|A|C|2562
6SPF|1|A|G|2563
6SPF|1|A|A|2564
6SPF|1|A|G|2565

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3