IL_6SPF_091

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_091 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.174

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6SPF|1|A|C|2639
6SPF|1|A|U|2640
6SPF|1|A|A|2641
6SPF|1|A|G|2642
6SPF|1|A|U|2643
6SPF|1|A|A|2644
6SPF|1|A|C|2645
*
6SPF|1|A|G|2650
6SPF|1|A|G|2651
6SPF|1|A|A|2652
6SPF|1|A|C|2653
6SPF|1|A|C|2654
6SPF|1|A|G|2655

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6