IL_6SPF_115

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6SPF|1|a|U|238, 6SPF|1|a|C|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_115 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6SPF|1|a|G|236
6SPF|1|a|A|237
6SPF|1|a|U|238
6SPF|1|a|U|239
6SPF|1|a|A|240
6SPF|1|a|G|241
*
6SPF|1|a|C|271
6SPF|1|a|G|272
6SPF|1|a|A|273
6SPF|1|a|C|274
6SPF|1|a|G|275
6SPF|1|a|A|276
6SPF|1|a|U|277
6SPF|1|a|C|278

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17