IL_6SPF_121

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGCA*UUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_121 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3605

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SPF|1|a|G|448
6SPF|1|a|G|449
6SPF|1|a|C|450
6SPF|1|a|A|451
*
6SPF|1|a|U|471
6SPF|1|a|U|472
6SPF|1|a|U|473

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16