IL_6SPF_158

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_158 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SPF|1|A|U|1838
6SPF|1|A|U|1839
6SPF|1|A|A|1840
6SPF|1|A|A|1841
6SPF|1|A|U|1842
6SPF|1|A|U|1843
6SPF|1|A|G|1844
6SPF|1|A|A|1845
6SPF|1|A|U|1846
6SPF|1|A|G|1847
*
6SPF|1|A|U|1869
6SPF|1|A|U|1870
6SPF|1|A|G|1871
6SPF|1|A|A|1872
6SPF|1|A|U|1873
6SPF|1|A|C|1874
6SPF|1|A|G|1875
6SPF|1|A|A|1876
6SPF|1|A|A|1877
6SPF|1|A|G|1878

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains