IL_6SPF_165
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UAGGAAU*AGCCUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_165 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3933
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SPF|1|a|U|119
6SPF|1|a|A|120
6SPF|1|a|G|121
6SPF|1|a|G|122
6SPF|1|a|A|123
6SPF|1|a|A|124
6SPF|1|a|U|125
*
6SPF|1|a|A|225
6SPF|1|a|G|226
6SPF|1|a|C|227
6SPF|1|a|C|228
6SPF|1|a|U|229
6SPF|1|a|A|230
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
- Chain t
- 30S ribosomal protein S20
Coloring options: