IL_6SPF_166

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUGG*CCA

Length

7 nucleotides

Bulged bases

6SPF|1|a|U|362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_166 not in the Motif Atlas

Geometric match to IL_8E4X_001

Geometric discrepancy: 0.2848

The information below is about IL_8E4X_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6SPF|1|a|U|361
6SPF|1|a|U|362
6SPF|1|a|G|363
6SPF|1|a|G|364
*
6SPF|1|a|C|385
6SPF|1|a|C|386
6SPF|1|a|A|387

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16