IL_6SPF_173
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UGAACG*CGUUA
- Length
- 11 nucleotides
- Bulged bases
- 6SPF|1|a|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPF_173 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.297
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6SPF|1|a|U|30
6SPF|1|a|G|31
6SPF|1|a|A|32
6SPF|1|a|A|33
6SPF|1|a|C|34
6SPF|1|a|G|35
*
6SPF|1|a|C|543
6SPF|1|a|G|544
6SPF|1|a|U|545
6SPF|1|a|U|546
6SPF|1|a|A|547
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: