IL_6SPG_016

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6SPG|1|A|G|791, 6SPG|1|A|G|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1566

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SPG|1|A|G|664
6SPG|1|A|A|665
6SPG|1|A|A|666
6SPG|1|A|A|667
6SPG|1|A|C|668
*
6SPG|1|A|G|789
6SPG|1|A|A|790
6SPG|1|A|G|791
6SPG|1|A|A|792
6SPG|1|A|U|793
6SPG|1|A|A|794
6SPG|1|A|G|795
6SPG|1|A|C|796

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15