IL_6SPG_035

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

6SPG|1|A|A|999

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_035 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1312

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6SPG|1|A|U|994
6SPG|1|A|C|995
6SPG|1|A|C|996
6SPG|1|A|C|997
6SPG|1|A|A|998
6SPG|1|A|A|999
6SPG|1|A|A|1000
6SPG|1|A|G|1001
*
6SPG|1|A|C|1141
6SPG|1|A|A|1142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20