IL_6SPG_038
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GGUAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6SPG|1|A|A|1117, 6SPG|1|A|U|1120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPG_038 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1134
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6SPG|1|A|G|1014
6SPG|1|A|G|1015
6SPG|1|A|U|1016
6SPG|1|A|A|1017
6SPG|1|A|A|1018
6SPG|1|A|A|1019
6SPG|1|A|C|1020
*
6SPG|1|A|G|1114
6SPG|1|A|G|1115
6SPG|1|A|A|1116
6SPG|1|A|A|1117
6SPG|1|A|G|1118
6SPG|1|A|A|1119
6SPG|1|A|U|1120
6SPG|1|A|G|1121
6SPG|1|A|U|1122
6SPG|1|A|A|1123
6SPG|1|A|A|1124
6SPG|1|A|C|1125
6SPG|1|A|G|1126
6SPG|1|A|G|1127
6SPG|1|A|G|1128
6SPG|1|A|G|1129
6SPG|1|A|C|1130
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
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