IL_6SPG_046

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6SPG|1|A|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6SPG|1|A|C|1195
6SPG|1|A|U|1196
6SPG|1|A|G|1197
6SPG|1|A|U|1198
6SPG|1|A|G|1199
6SPG|1|A|A|1200
6SPG|1|A|A|1201
6SPG|1|A|G|1202
*
6SPG|1|A|U|1221
6SPG|1|A|G|1222
6SPG|1|A|G|1223
6SPG|1|A|A|1224
6SPG|1|A|G|1225

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20