IL_6SPG_099

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_099 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1365

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SPG|1|A|C|2639
6SPG|1|A|U|2640
6SPG|1|A|A|2641
6SPG|1|A|G|2642
6SPG|1|A|U|2643
6SPG|1|A|A|2644
6SPG|1|A|C|2645
*
6SPG|1|A|G|2650
6SPG|1|A|G|2651
6SPG|1|A|A|2652
6SPG|1|A|C|2653
6SPG|1|A|C|2654
6SPG|1|A|G|2655

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L14