IL_6SPG_103
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GAUAAC*GGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6SPG|1|A|A|2752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPG_103 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.1112
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SPG|1|A|G|2724
6SPG|1|A|A|2725
6SPG|1|A|U|2726
6SPG|1|A|A|2727
6SPG|1|A|A|2728
6SPG|1|A|C|2729
*
6SPG|1|A|G|2749
6SPG|1|A|G|2750
6SPG|1|A|A|2751
6SPG|1|A|A|2752
6SPG|1|A|A|2753
6SPG|1|A|C|2754
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
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