IL_6SPG_168

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6SPG|1|a|A|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_168 not in the Motif Atlas

Geometric match to IL_2ET8_003

Geometric discrepancy: 0.3233

The information below is about IL_2ET8_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6SPG|1|a|C|1401
6SPG|1|a|A|1402
6SPG|1|a|C|1403
*
6SPG|1|a|G|1485
6SPG|1|a|A|1486
6SPG|1|a|A|1487
6SPG|1|a|G|1488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12