IL_6SPG_180

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1217

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SPG|1|A|U|1838
6SPG|1|A|U|1839
6SPG|1|A|A|1840
6SPG|1|A|A|1841
6SPG|1|A|U|1842
6SPG|1|A|U|1843
6SPG|1|A|G|1844
6SPG|1|A|A|1845
6SPG|1|A|U|1846
6SPG|1|A|G|1847
*
6SPG|1|A|U|1869
6SPG|1|A|U|1870
6SPG|1|A|G|1871
6SPG|1|A|A|1872
6SPG|1|A|U|1873
6SPG|1|A|C|1874
6SPG|1|A|G|1875
6SPG|1|A|A|1876
6SPG|1|A|A|1877
6SPG|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains