IL_6SV4_011

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6SV4|1|2|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_011 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1543

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6SV4|1|2|G|143
6SV4|1|2|U|144
6SV4|1|2|A|145
6SV4|1|2|U|146
6SV4|1|2|A|147
6SV4|1|2|A|148
6SV4|1|2|C|149
*
6SV4|1|2|G|165
6SV4|1|2|C|166
6SV4|1|2|U|167
6SV4|1|2|A|168
6SV4|1|2|A|169
6SV4|1|2|U|170
6SV4|1|2|A|171
6SV4|1|2|C|172

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A