IL_6SV4_027
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUA*UAAUU
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|2|A|506
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_027 not in the Motif Atlas
- Geometric match to IL_5J7L_327
- Geometric discrepancy: 0.3942
- The information below is about IL_5J7L_327
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_43644.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2|G|480
6SV4|1|2|A|481
6SV4|1|2|U|482
6SV4|1|2|A|483
*
6SV4|1|2|U|504
6SV4|1|2|A|505
6SV4|1|2|A|506
6SV4|1|2|U|507
6SV4|1|2|U|508
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain W
- 40S ribosomal protein S9-A
- Chain g
- 40S ribosomal protein S30-A
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