IL_6SV4_040
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6SV4|1|2|U|794
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_040 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3088
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2|G|751
6SV4|1|2|A|752
6SV4|1|2|A|753
6SV4|1|2|A|754
6SV4|1|2|A|755
6SV4|1|2|A|756
6SV4|1|2|A|757
6SV4|1|2|U|758
6SV4|1|2|U|759
*
6SV4|1|2|A|791
6SV4|1|2|U|792
6SV4|1|2|A|793
6SV4|1|2|U|794
6SV4|1|2|U|795
6SV4|1|2|A|796
6SV4|1|2|G|797
6SV4|1|2|C|798
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain W
- 40S ribosomal protein S9-A
- Chain X
- 40S ribosomal protein S11-A
- Chain b
- 40S ribosomal protein S22-A
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