IL_6SV4_060

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

6SV4|1|2|G|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_060 not in the Motif Atlas

Homologous match to IL_4V88_447

Geometric discrepancy: 0.5041

The information below is about IL_4V88_447

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_34780.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SV4|1|2|A|1224
6SV4|1|2|U|1225
6SV4|1|2|A|1226
6SV4|1|2|A|1227
6SV4|1|2|G|1228
6SV4|1|2|G|1229
6SV4|1|2|A|1230
6SV4|1|2|U|1231
6SV4|1|2|U|1232
6SV4|1|2|G|1233
*
6SV4|1|2|C|1252
6SV4|1|2|U|1253
6SV4|1|2|U|1254
6SV4|1|2|G|1255
6SV4|1|2|A|1256
6SV4|1|2|U|1257
6SV4|1|2|U|1258
6SV4|1|2|U|1259

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain D

40S ribosomal protein S12

Chain N

Ubiquitin-40S ribosomal protein S31