IL_6SV4_065
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6SV4|1|2|A|1427
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_065 not in the Motif Atlas
- Geometric match to IL_4V88_452
- Geometric discrepancy: 0.1703
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6SV4|1|2|C|1280
6SV4|1|2|G|1281
*
6SV4|1|2|C|1426
6SV4|1|2|A|1427
6SV4|1|2|G|1428
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S16-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain R
- 40S ribosomal protein S2
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