IL_6SV4_066

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_066 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1733

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6SV4|1|2|U|1290
6SV4|1|2|G|1291
6SV4|1|2|G|1292
*
6SV4|1|2|C|1323
6SV4|1|2|G|1324
6SV4|1|2|A|1325

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein S3

Chain G

40S ribosomal protein S17-B

Chain P

40S ribosomal protein S0-A

Chain R

40S ribosomal protein S2