IL_6SV4_096

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

6SV4|1|2b|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_096 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1977

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6SV4|1|2b|U|113
6SV4|1|2b|C|114
6SV4|1|2b|G|115
6SV4|1|2b|U|116
*
6SV4|1|2b|A|300
6SV4|1|2b|A|301

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Vb

40S ribosomal protein S8-A

Chain Xb

40S ribosomal protein S11-A