IL_6SV4_124
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_124 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3875
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_46387.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6SV4|1|2b|U|745
6SV4|1|2b|A|746
6SV4|1|2b|C|747
*
6SV4|1|2b|G|802
6SV4|1|2b|A|803
6SV4|1|2b|A|804
6SV4|1|2b|U|805
6SV4|1|2b|A|806
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Ub
- 40S ribosomal protein S7-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain bb
- 40S ribosomal protein S22-A
- Chain cb
- 40S ribosomal protein S23-A
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