IL_6SV4_142
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|2b|C|1158, 6SV4|1|2b|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_142 not in the Motif Atlas
- Geometric match to IL_1KOG_007
- Geometric discrepancy: 0.1837
- The information below is about IL_1KOG_007
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
6SV4|1|2b|A|1157
6SV4|1|2b|C|1158
6SV4|1|2b|C|1159
6SV4|1|2b|A|1160
*
6SV4|1|2b|U|1617
6SV4|1|2b|C|1618
6SV4|1|2b|C|1619
6SV4|1|2b|C|1620
6SV4|1|2b|U|1621
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Bb
- Rps5p
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Lb
- 40S ribosomal protein S28-B
- Chain eb
- 40S ribosomal protein S26-A
- Chain mb
- Transfer RNA; tRNA
Coloring options: