IL_6SV4_156

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

6SV4|1|2b|U|1370, 6SV4|1|2b|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_156 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.3387

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SV4|1|2b|G|1352
6SV4|1|2b|U|1353
6SV4|1|2b|G|1354
6SV4|1|2b|C|1355
*
6SV4|1|2b|G|1368
6SV4|1|2b|U|1369
6SV4|1|2b|U|1370
6SV4|1|2b|A|1371
6SV4|1|2b|U|1372
6SV4|1|2b|C|1373

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Fb

40S ribosomal protein S16-A

Chain Ib

40S ribosomal protein S19-A

Chain Jb

40S ribosomal protein S20