IL_6SV4_163

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_163 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1484

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SV4|1|2b|G|1638
6SV4|1|2b|C|1639
6SV4|1|2b|C|1640
6SV4|1|2b|C|1641
*
6SV4|1|2b|G|1760
6SV4|1|2b|U|1761
6SV4|1|2b|A|1762
6SV4|1|2b|A|1763
6SV4|1|2b|C|1764

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain mb

Transfer RNA; tRNA