IL_6SV4_176

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6SV4|1|2c|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_176 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.3384

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6SV4|1|2c|U|37
6SV4|1|2c|C|38
6SV4|1|2c|A|39
6SV4|1|2c|A|40
6SV4|1|2c|A|41
*
6SV4|1|2c|U|466
6SV4|1|2c|G|467
6SV4|1|2c|A|468
6SV4|1|2c|C|469
6SV4|1|2c|A|470
6SV4|1|2c|A|471

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A