IL_6SV4_181

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_181 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3849

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SV4|1|2c|G|109
6SV4|1|2c|U|110
6SV4|1|2c|U|111
6SV4|1|2c|A|112
*
6SV4|1|2c|U|302
6SV4|1|2c|U|303
6SV4|1|2c|U|304
6SV4|1|2c|C|305

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S4-A

Chain Vc

40S ribosomal protein S8-A

Chain Xc

40S ribosomal protein S11-A