IL_6SV4_184
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6SV4|1|2c|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_184 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1995
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SV4|1|2c|G|143
6SV4|1|2c|U|144
6SV4|1|2c|A|145
6SV4|1|2c|U|146
6SV4|1|2c|A|147
6SV4|1|2c|A|148
6SV4|1|2c|C|149
*
6SV4|1|2c|G|165
6SV4|1|2c|C|166
6SV4|1|2c|U|167
6SV4|1|2c|A|168
6SV4|1|2c|A|169
6SV4|1|2c|U|170
6SV4|1|2c|A|171
6SV4|1|2c|C|172
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Tc
- 40S ribosomal protein S6-A
- Chain dc
- 40S ribosomal protein S24-A
- Chain zE
- 60S ribosomal protein L24-A
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