IL_6SV4_186
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAC*GAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_186 not in the Motif Atlas
- Homologous match to IL_4V88_396
- Geometric discrepancy: 0.2816
- The information below is about IL_4V88_396
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6SV4|1|2c|C|186
6SV4|1|2c|G|187
6SV4|1|2c|A|188
6SV4|1|2c|C|189
*
6SV4|1|2c|G|196
6SV4|1|2c|A|197
6SV4|1|2c|A|198
6SV4|1|2c|G|199
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Vc
- 40S ribosomal protein S8-A
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