IL_6SV4_203
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_203 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1755
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6SV4|1|2c|A|550
6SV4|1|2c|G|551
6SV4|1|2c|G|552
6SV4|1|2c|G|553
6SV4|1|2c|C|554
6SV4|1|2c|A|555
6SV4|1|2c|A|556
6SV4|1|2c|G|557
*
6SV4|1|2c|C|587
6SV4|1|2c|U|588
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Rc
- 40S ribosomal protein S2
- Chain Wc
- 40S ribosomal protein S9-A
- Chain gc
- 40S ribosomal protein S30-A
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