IL_6SV4_232

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_232 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.2102

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6SV4|1|2c|A|1234
6SV4|1|2c|C|1235
6SV4|1|2c|A|1236
*
6SV4|1|2c|U|1249
6SV4|1|2c|U|1250
6SV4|1|2c|U|1251

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Ec

40S ribosomal protein S15

Chain Nc

Ubiquitin-40S ribosomal protein S31