IL_6SV4_237

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_237 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2345

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6SV4|1|2c|U|1290
6SV4|1|2c|G|1291
6SV4|1|2c|G|1292
*
6SV4|1|2c|C|1323
6SV4|1|2c|G|1324
6SV4|1|2c|A|1325

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Ac

40S ribosomal protein S3

Chain Gc

40S ribosomal protein S17-B

Chain Pc

40S ribosomal protein S0-A

Chain Rc

40S ribosomal protein S2