3D structure

PDB id
6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUA*UGGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SV4_242 not in the Motif Atlas
Homologous match to IL_4V88_458
Geometric discrepancy: 0.1919
The information below is about IL_4V88_458
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_58032.1
Basepair signature
cWW-tWH-cWW-L-L-R
Number of instances in this motif group
2

Unit IDs

6SV4|1|2c|C|1389
6SV4|1|2c|U|1390
6SV4|1|2c|A|1391
*
6SV4|1|2c|U|1407
6SV4|1|2c|G|1408
6SV4|1|2c|G|1409
6SV4|1|2c|A|1410
6SV4|1|2c|A|1411
6SV4|1|2c|G|1412

Current chains

Chain 2c
18S rRNA

Nearby chains

Chain Bc
Rps5p
Chain Fc
40S ribosomal protein S16-A
Chain Gc
40S ribosomal protein S17-B
Chain Oc
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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