IL_6SV4_249
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_249 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2529
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28833.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2c|C|1644
6SV4|1|2c|G|1645
6SV4|1|2c|C|1646
6SV4|1|2c|U|1647
*
6SV4|1|2c|A|1753
6SV4|1|2c|A|1754
6SV4|1|2c|A|1755
6SV4|1|2c|A|1756
6SV4|1|2c|G|1757
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain ZQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain cc
- 40S ribosomal protein S23-A
- Chain gc
- 40S ribosomal protein S30-A
- Chain nc
- Transfer RNA; tRNA
- Chain zS
- 60S ribosomal protein L41-B
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