IL_6SV4_256

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_256 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.1699

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6SV4|1|2c|C|1675
6SV4|1|2c|U|1676
6SV4|1|2c|C|1677
6SV4|1|2c|A|1678
*
6SV4|1|2c|U|1723
6SV4|1|2c|U|1724
6SV4|1|2c|U|1725
6SV4|1|2c|G|1726

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Tc

40S ribosomal protein S6-A

Chain Vc

40S ribosomal protein S8-A

Chain zE

60S ribosomal protein L24-A