IL_6SV4_262
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_262 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1219
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|BQ|C|82
6SV4|1|BQ|U|83
6SV4|1|BQ|U|84
6SV4|1|BQ|A|85
6SV4|1|BQ|G|86
6SV4|1|BQ|U|87
6SV4|1|BQ|A|88
6SV4|1|BQ|A|89
*
6SV4|1|BQ|U|97
6SV4|1|BQ|G|98
6SV4|1|BQ|A|99
6SV4|1|BQ|A|100
6SV4|1|BQ|G|101
6SV4|1|BQ|C|102
6SV4|1|BQ|G|103
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
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