IL_6SV4_296

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_296 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2108

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

6SV4|1|BQ|A|997
6SV4|1|BQ|A|998
*
6SV4|1|BQ|U|1050
6SV4|1|BQ|U|1051
6SV4|1|BQ|U|1052

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BR

5S ribosomal RNA; 5S rRNA