IL_6SV4_341

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6SV4|1|BQ|A|2242, 6SV4|1|BQ|A|2243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_341 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1698

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SV4|1|BQ|U|2200
6SV4|1|BQ|G|2201
*
6SV4|1|BQ|U|2241
6SV4|1|BQ|A|2242
6SV4|1|BQ|A|2243
6SV4|1|BQ|A|2244

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AW

60S ribosomal protein L2-A