IL_6SV4_369

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6SV4|1|BQ|A|2971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_369 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2485

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6SV4|1|BQ|C|2960
6SV4|1|BQ|G|2961
*
6SV4|1|BQ|C|2970
6SV4|1|BQ|A|2971
6SV4|1|BQ|G|2972

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AW

60S ribosomal protein L2-A

Chain BD

60S ribosomal protein L10

Chain n

Transfer RNA; tRNA