IL_6SV4_392

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6SV4|1|BQ|U|3354, 6SV4|1|BQ|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_392 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1989

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6SV4|1|BQ|C|3349
6SV4|1|BQ|C|3350
*
6SV4|1|BQ|G|3353
6SV4|1|BQ|U|3354
6SV4|1|BQ|U|3355
6SV4|1|BQ|G|3356

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A