IL_6SV4_398
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6SV4|1|BR|C|73
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_398 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1323
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SV4|1|BR|A|72
6SV4|1|BR|C|73
6SV4|1|BR|C|74
6SV4|1|BR|G|75
6SV4|1|BR|A|76
6SV4|1|BR|G|77
6SV4|1|BR|U|78
6SV4|1|BR|A|79
6SV4|1|BR|G|80
*
6SV4|1|BR|C|100
6SV4|1|BR|G|101
6SV4|1|BR|A|102
6SV4|1|BR|A|103
6SV4|1|BR|A|104
6SV4|1|BR|C|105
6SV4|1|BR|U|106
Current chains
- Chain BR
- 5S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein L10
- Chain BH
- 60S ribosomal protein L20-A
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: